PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077516001
Common NameGSBRNA2T00077516001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 162aa    MW: 18324.6 Da    PI: 9.3561
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077516001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-393191262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++lkcprCds ntkfCyynny+lsqPr++Ck+CrryWtkGG+lrn+PvGgg+rkn k+s
  GSBRNA2T00077516001 31 EQQQLKCPRCDSPNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGSLRNIPVGGGSRKNTKRS 91
                         5799*****************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.3E-323389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0313589IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-263690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQDLTSAAAY YHHQSMLMMA AKQQQQPELP EQQQLKCPRC DSPNTKFCYY NNYNLSQPRH  60
YCKNCRRYWT KGGSLRNIPV GGGSRKNTKR SSSSSPSSSN LKDKTVAVPD QKPNSEEESR  120
PKLVEEERRM TGQEMDPTRM LYGLPYPGIH LGLGPGIPRD D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.137190.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077516001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893449e-42AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144887.16e-94PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821559e-70DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A078I4751e-118A0A078I475_BRANA; BnaA05g15330D protein
STRINGBra030423.1-P2e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-53DOF zinc finger protein 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]